Abstract:Objective To study changes of the bacterial community structure in the Second Drainage Ditch in Ningxia after ecological engineering.Methods We employed high-throughput sequencing to study the bacterial community structures in water samples. We explored the factors affecting the bacterial community structure by non-metric multidimensional scaling (NMDS) and redundancy analysis (RDA).Results From August 2021 to August 2022, the ammonium nitrogen, total nitrogen (TN), permanganate index, dichromate oxidizability (CODCr), and fluoride in the water decreased substantially after the ecological engineering. The dominant bacterial phyla in the water were Proteobacteria, Actinobacteria, Bacteroidetes, and Chloroflexi and the dominant genera included hgcI_clade, SAR11_cladeIII, Limnohabitans, Rhodoferax, and Flavobacterium. The bacterial community structures showed significant differences across different sampling locations. The NMDS results revealed significant variations in the bacterial community structure across different sampling months. The RDA results indicated that total phosphorus (TP), CODCr, and pH were the key factors influencing the bacterial community structure. Notably, TP, CODCr, and TN together explained the largest variance (8.81%) in the bacterial community structure, followed by TP combined with CODCr (-8.05%).Conclusion After ecological engineering, the water quality of the Second Drainage Ditch improved, and the bacterial community structure became more diverse. The physicochemical properties of the water strongly influence the distribution and diversity of bacterial communities in the Second Drainage Ditch in Ningxia, which provide a scientific basis for managing the regional water environment.