几株新鞘氨醇杆菌的趋化性及其相关基因组成特点

Chemotaxis and characteristics of chemotactic genes in Novosphingobium strains

摘要:

[目的]选择了几株隶属于新鞘氨醇杆菌属（Novosphingobium）的有和没有多环芳烃（PAHs）降解能力的细菌，在基因组水平比较分析它们的趋化通路，并探究其中一些菌株对芳香化合物和三羧酸（TCA）循环中间代谢产物的趋化性。[方法]通过基因组的比较分析，研究了几株新鞘氨醇杆菌的趋化蛋白组成和趋化基因分布，并采用滴定法和游动平板法检测了相关菌对芳香族化合物和TCA循环中间代谢产物的趋化性。[结果]N. pentaromativorans US6-1、N. pentaromativorans F2、Novosphingobium indicum K13、Novosphingobium stygium DSM 12445、Novosphingobium sp.C2AC等5株新鞘氨醇杆菌对芳香族化合物和TCA循环中间代谢物具有不同程度的趋化性；所选的7株已完成基因组测序的新鞘氨醇杆菌N. pentaromativorans F2、N. pentaromativorans US6-1、Novosphingobium sp.PP1Y、Novosphingobium sp.AP12、Novosphingobium sp.Rr 2-17，Novosphingobium sp.B-7和Novosphingobium sp.DSM 19370均含有趋化蛋白MCP、CheW、CheA、CheB、CheR和CheY，且亲缘关系最近的US6-1、F2和PP1Y 3株菌的che基因簇中的基因排列一致，为cheW-Y-D-B-R-A-（X）；新鞘氨醇杆菌的趋化系统属Fla类型。[结论]几株新鞘氨醇杆菌都具有较为完整的趋化通路，且对多种芳烃及其代谢物的趋化性各不相同，其中菌株US6-1趋化现象最明显。

Abstract:

[Objective] The present study aims to analyze the chemotaxis genes and proteins of several PAH-degrading Novosphingobium strains, and the chemotaxis of these strains toward aromatic compounds and intermediates. [Methods] Based on genome comparative analysis, we identified the chemotaxis genes organization and proteins distribution. We used drop and swarm plate assays to detect the chemotaxis of these strains toward aromatic compounds and intermediates of TCA cycle. [Results] We found that all these Novosphingobium strains showed chemotaxis, but the chemotatic ability varied. The completed genome sequenced strains N. pentaromativorans F2, N. pentaromativorans US6-1, N. pentaromativorans PP1Y, Novosphingobium sp. AP12, Novosphingobium sp. Rr 2-17, and Novosphingobium nitrogenifigens DSM 19370 contained MCP, CheW, CheA, CheB, CheR and CheY. Strain F2, US6-1 and PP1Y, shared a consistent order of chemotaxis genes in "che" cluster. The chemotatic system of these Novosphingobium strains belonged to the Fla chemotactic system. [Conclusion] These strains all contained a complete chmotaxis pathway. Their chemotactic ability toward aromatic compounds and intermediates varied, and the chemotaxis of US6-1 was obvious.