中国传统发酵食品微生物组研究进展
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基金项目:

国家自然科学基金(31530055);国家重点研发计划(2016YFD0400503)


Advances in microbiome study of traditional Chinese fermented foods
Author:
  • Cong Ren

    Cong Ren

    Brewing and Enzyme Technology Center, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu Province, China;Key Laboratory of Industrial Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu Province, China
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  • Hai Du

    Hai Du

    Brewing and Enzyme Technology Center, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu Province, China;Key Laboratory of Industrial Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu Province, China
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  • Yan Xu

    Yan Xu

    Brewing and Enzyme Technology Center, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu Province, China;State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, Jiangsu Province, China;Key Laboratory of Industrial Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu Province, China
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    摘要:

    传统发酵食品风味独特、营养丰富,多采用自然接种方式进行生产,部分类型的生产技艺已具有数千年的历史。近年来应用新技术手段对传统发酵食品发酵过程进行的研究表明,传统发酵食品微生物组具有丰富的科学内涵和重要的应用价值。本文就我国传统发酵食品微生物组的基本特征、研究进展和发展方向进行了简要的评述。

    Abstract:

    Traditional Chinese fermented foods, usually produced through fermentation by spontaneously inoculation, are characterized by their special flavors and rich nutrients. The techniques of some traditional fermented foods have thousands of years of history. In recent years, new technologies have been used to explore the mysteries of fermenting processes for traditional fermented foods worldwide, revealing that traditional fermentation systems are valuable to both basic and application research. In this review, we summarize the general features and recent progresses in the microbiome study of traditional Chinese fermented foods, and try to predict the future research directions.

    参考文献
    [1] Marco ML, Heeney D, Binda S, Cifelli CJ, Cotter PD, Foligne B, Ganzle M, Kort R, Pasin G, Pihlanto A, Smid EJ, Hutkins R. Health benefits of fermented foods:microbiota and beyond. Current Opinion in Biotechnology, 2016, 44:94-102.
    [2] McGovern PE, Zhang J, Tang J, Zhang Z, Hall GR, Moreau RA, Nunez A, Butrym ED, Richards MP, Wang CS, Cheng G, Zhao Z, Wang C. Fermented beverages of pre-and proto-historic China. Proceedings of the National Academy of Sciences U.S.A, 2004, 101(51):17593-17598.
    [3] Wolfe BE, Dutton RJ. Fermented foods as experimentally tractable microbial ecosystems. Cell, 2015, 161(1):49-55.
    [4] Jin G, Zhu Y, Xu Y. Mystery behind Chinese liquor fermentation. Trends in Food Science & Technology, 2017, 63:18-28.
    [5] Corder R, Douthwaite JA, Lees DM, Khan NQ, Viseu Dos Santos AC, Wood EG, Carrier MJ. Endothelin-1 synthesis reduced by red wine. Nature, 2001, 414(6866):863-864.
    [6] David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, Biddinger SB, Dutton RJ, Turnbaugh PJ. Diet rapidly and reproducibly alters the human gut microbiome. Nature, 2014, 505(7484):559-563.
    [7] Nakamura K, Ogasawara Y, Endou K, Fujimori S, Koyama M, Akano H. Phenolic compounds responsible for the superoxide dismutase-like activity in high-Brix apple vinegar. Journal of Agricultural and Food Chemistry, 2010, 58(18):10124-10132.
    [8] Wei X, Luo M, Xu L, Zhang Y, Lin X, Kong P, Liu H. Production of fibrinolytic enzyme from Bacillus amyloliquefaciens by fermentation of chickpeas, with the evaluation of the anticoagulant and antioxidant properties of chickpeas. Journal of Agricultural and Food Chemistry, 2011, 59(8):3957-3963.
    [9] Dunkel A, Steinhaus M, Kotthoff M, Nowak B, Krautwurst D, Schieberle P, Hofmann T. Nature's chemical signatures in human olfaction:a foodborne perspective for future biotechnology. Angewandte Chemie International Edition, 2014, 53(28):7124-7143.
    [10] Tamang JP, Watanabe K, Holzapfel WH. Review:diversity of microorganisms in global fermented foods and beverages. Frontiers in Microbiology, 2016, 7:377.
    [11] Bokulich NA, Lewis ZT, Boundy-Mills K, Mills DA. A new perspective on microbial landscapes within food production. Current Opinion in Biotechnology, 2016, 37:182-189.
    [12] Wolfe BE, Button JE, Santarelli M, Dutton RJ. Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell, 2014, 158(2):422-433.
    [13] Hong X, Chen J, Liu L, Wu H, Tan H, Xie G, Xu Q, Zou H, Yu W, Wang L, Qin N. Metagenomic sequencing reveals the relationship between microbiota composition and quality of Chinese Rice Wine. Scientific Reports, 2016, 6:26621.
    [14] 刘芸雅. 绍兴黄酒发酵中微生物群落结构及其对风味物质影响研究. 江南大学硕士学位论文, 2015.
    [15] 陈双. 中国黄酒挥发性组分及香气特征研究. 江南大学博士学位论文, 2013.
    [16] Chen S, Xu Y, Qian MC. Aroma Characterization of Chinese Rice Wine by Gas Chromatography-Olfactometry, Chemical Quantitative Analysis, and Aroma Reconstitution. Journal of Agricultural and Food Chemistry, 2013, 61(47):11295-11302.
    [17] 谢广发. 绍兴黄酒功能性组分的检测与研究. 江南大学硕士学位论文, 2005.
    [18] Wang X, Du H, Xu Y. Source tracking of prokaryotic communities in fermented grain of Chinese strong-flavor liquor. International Journal of Food Microbiology, 2017, 244:27-35.
    [19] Zheng XW, Yan Z, Han BZ, Zwietering MH, Samson RA, Boekhout T, Robert Nout MJ. Complex microbiota of a Chinese "Fen" liquor fermentation starter (Fen-Daqu), revealed by culture-dependent and culture-independent methods. Food Microbiology, 2012, 31(2):293-300.
    [20] Zhu SM, Xu ML, Ramaswamy HS, Yang MY, Yu Y. Effect of high pressure treatment on the aging characteristics of Chinese liquor as evaluated by electronic nose and chemical analysis. Scientific Reports, 2016, 6:30273.
    [21] Fan WL, Shen HY, Xu Y. Quantification of volatile compounds in Chinese soy sauce aroma type liquor by stir bar sorptive extraction and gas chromatography-mass spectrometry. Journal of the Science of Food and Agriculture, 2011, 91(7):1187-1198.
    [22] Wang ZM, Lu ZM, Shi JS, Xu ZH. Exploring flavour-producing core microbiota in multispecies solid-state fermentation of traditional Chinese vinegar. Scientific Reports, 2016, 6:26818.
    [23] Sulaiman J, Gan HM, Yin WF, Chan KG. Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Frontiers in Microbiology, 2014, 5:556.
    [24] Yan YZ, Qian YL, Ji FD, Chen JY, Han BZ. Microbial composition during Chinese soy sauce koji-making based on culture dependent and independent methods. Food Microbiology, 2013, 34(1):189-195.
    [25] Zhang LQ, Zheng J, Huang J, Wu ZD, Zhou RQ. Analysis of volatile aroma components in fermented soy sauce. China Condiment, 2013, 38(2):62-66. (in Chinese) 张立强, 郑佳, 黄钧, 吴重德, 周荣清. 酿造酱油挥发性香气成分及多重辨析. 中国调味品, 2013, 38(2):62-66.
    [26] 曹翠峰. 大豆发酵食品-腐乳的微生物学研究. 中国农业大学硕士学位论文, 2001.
    [27] Wang FJ, Lu F, Qu Y, Zhang J, Huang CD. Separation and identification of lactic acid bacteria isolated from Sufu. China Condiment, 2010, 35(7):98-101. (in Chinese) 王夫杰, 鲁绯, 渠岩, 张建, 黄持都. 腐乳中乳酸菌的分离与鉴定. 中国调味品, 2010, 35(7):98-101.
    [28] Liang H, Zhang A, Wu Z, Liu C, Zhang W. Characterization of microbial community during the fermentation of Chinese Homemade paocai, a traditional fermented vegetable food. Food Science and Technology Research, 2016, 22(4):467-475.
    [29] Zhang XJ, Xia S, Chen J, Feng X, Liu SQ. Research of culturable microbial community in Sichuan pickles. China Condiment. 2015, 40(12):64-68. (in Chinese) 张晓娟, 夏珊, 陈洁, 冯霞, 刘松青. 四川泡菜可培养微生物菌群的研究. 中国调味品, 2015, 40(12):64-68.
    [30] Chen G, Zhang QS, Yu WH, Liu Z, Li H, You JG. Analysis of volatile compounds and determination of key odors in Sichuan Paocai (Part Ⅱ). China Brewing, 2010, 35(12):19-23. (in Chinese) 陈功, 张其圣, 余文华, 刘竹, 李恒, 游敬刚. 四川泡菜挥发性成分及主体风味物质的研究(二). 中国酿造, 2010, 35(12):19-23.
    [31] Zhu Y, Tramper J. Koji-where East meets West in fermentation. Biotechnology Advances, 2013, 31(8):1448-1457.
    [32] Li P, Lin W, Liu X, Wang X, Luo L. Environmental factors affecting microbiota dynamics during traditional solid-state fermentation of Chinese Daqu starter. Food Microbiology, 2016, 7:1237.
    [33] Lü XG, Jia RB, Li Y, Chen F, Chen ZC, Liu B, Chen SJ, Rao PF, Ni L. Characterization of the dominant bacterial communities of traditional fermentation starters for Hong Qu glutinous rice wine by means of MALDI-TOF mass spectrometry fingerprinting, 16S rRNA gene sequencing and species-specific PCRs. Food Control, 2016, 67:292-302.
    [34] Wang HY, Gao YB, Fan QW, Xu Y. Characterization and comparison of microbial community of different typical Chinese liquor Daqus by PCR-DGGE. Letters in Applied Microbiology, 2011, 53(2):134-140.
    [35] Zhang X, Zhao J, Du X. Barcoded pyrosequencing analysis of the bacterial community of Daqu for light-flavour Chinese liquor. Letters in Applied Microbiology, 2014, 58(6):549-555.
    [36] Wang HY, Xu Y. Effect of temperature on microbial composition of starter culture for Chinese light aroma style liquor fermentation. Letters in Applied Microbiology, 2015, 60(1):85-91.
    [37] Zheng XW, Tabrizi MR, Nout MJR, Han BZ. Daqu-a traditional Chinese liquor fermentation starter. Journal of the Institute of Brewing, 2011, 117(1):82-90.
    [38] Chen B, Wu Q, Xu Y. Filamentous fungal diversity and community structure associated with the solid state fermentation of Chinese Maotai-flavor liquor. International Journal of Food Microbiology, 2014, 179:80-84.
    [39] Zheng XW, Yan Z, Nout MJ, Smid EJ, Zwietering MH, Boekhout T, Han JS, Han BZ. Microbiota dynamics related to environmental conditions during the fermentative production of Fen-Daqu, a Chinese industrial fermentation starter. International Journal of Food Microbiology, 2014, (182/183):57-62.[40] Li P, Lin W, Liu X, Wang X, Gan X, Luo L, Lin WT. Effect of bioaugmented inoculation on microbiota dynamics during solid-state fermentation of Daqu starter using autochthonous of Bacillus, Pediococcus, Wickerhamomyces and Saccharomycopsis. Food Microbiology, 2017, 61:83-92.
    [41] Li XR, Ma EB, Yan LZ, Meng H, Du XW, Quan ZX. Bacterial and fungal diversity in the starter production process of Fen liquor, a traditional Chinese liquor. Journal of Microbiology, 2013, 51(4):430-438.
    [42] Wu JJ, Ma YK, Zhang FF, Chen FS. Biodiversity of yeasts, lactic acid bacteria and acetic acid bacteria in the fermentation of "Shanxi aged vinegar", a traditional Chinese vinegar. Food Microbiology, 2012, 30(1):289-297.
    [43] Tamang JP, Shin DH, Jung SJ, Chae SW. Functional properties of microorganisms in fermented foods. Frontiers in Microbiology, 2016, 7:578.
    [44] Wu Q, Zhu W, Wang W, Xu Y. Effect of yeast species on the terpenoids profile of Chinese light-style liquor. Food Chemistry, 2015, 168:390-395.
    [45] Kong Y, Wu Q, Zhang Y, Xu Y. In situ analysis of metabolic characteristics reveals the key yeast in the spontaneous and solid-state fermentation process of Chinese light-style liquor. Applied and Environmental Microbiology, 2014, 80(12):3667-3676.
    [46] Shao MK, Wang HY, Xu Y, Nie Y. Yeast community structure and its impact on flavor components during the fermentation process of Chinese Maotai-flavor liquor. Microbiology China. 2014, 41(12):2466-2473. (in Chinese) 邵明凯, 王海燕, 徐岩, 聂尧. 酱香型白酒发酵中酵母群落结构及其对风味组分的影响. 微生物学通报, 2014, 41(12):2466-2473.
    [47] Wu Q, Kong Y, Xu Y. Flavor profile of Chinese liquor is altered by interactions of intrinsic and extrinsic microbes. Applied and Environmental Microbiology, 2016, 82(2):422-430.
    [48] Lu ZM, Liu N, Wang LJ, Wu LH, Gong JS, Yu YJ, Li GQ, Shi JS, Xu ZH. Elucidating and regulating the acetoin production role of microbial functional groups in multispecies acetic acid fermentation. Applied and Environmental Microbiology, 2016, 82(19):5860-5868.
    [49] Bokulich NA, Bergsveinson J, Ziola B, Mills DA. Mapping microbial ecosystems and spoilage-gene flow in breweries highlights patterns of contamination and resistance. eLife, 2015, 4(4):4364-4366.
    [50] Roldán AM, Lloret I, Palacios V. Use of a submerged yeast culture and lysozyme for the treatment of bacterial contamination during biological aging of sherry wines. Food Control, 2017, 71:42-49.
    [51] Zhang R, Wu Q, Xu Y. Aroma characteristics of Moutai-flavour liquor produced with Bacillus licheniformis by solid-state fermentation. Letters in Applied Microbiology, 2013, 57(1):11-18.
    [52] Zhu BF, Xu Y, Fan WL. Tetramethylpyrazine production by fermentative conversion of endogenous precursor from glucose by Bacillus sp. Journal of Bioscience and Bioengineering, 2009, 108:S122-S122.
    [53] Hu XL, Du H, Xu Y. Identification and quantification of the caproic acid-producing bacterium Clostridium kluyveri in the fermentation of pit mud used for Chinese strong-aroma type liquor production. International Journal of Food Microbiology, 2015, 214:116-122.
    [54] Tao Y, Hu X, Zhu X, Jin H, Xu Z, Tang Q, Li X. Production of butyrate from lactate by a newly isolated Clostridium sp. BPY5. Applied Biochemistry and Biotechnology, 2016, 179(3):361-374.
    [55] Cleveland J, Montville TJ, Nes IF, Chikindas ML. Bacteriocins:safe, natural antimicrobials for food preservation. International Journal of Food Microbiology, 2001, 71(1):1-20.
    [56] Jiao J, Zhang L, Yi H. Isolation and characterization of lactic acid bacteria from fresh Chinese traditional rice wines using denaturing gradient gel electrophoresis. Food Science and Biotechnology, 2016, 25(1):173-178.
    [57] Zhang WX, Qiao ZW, Shigematsu T, Tang YQ, Hu C, Morimura S, Kida K. Analysis of the bacterial community in Zaopei during production of Chinese Luzhou-flavor liquor. Journal of the Institute of Brewing, 2005, 111(2):215-222.
    [58] Nie Z, Zheng Y, Du H, Xie S, Wang M. Dynamics and diversity of microbial community succession in traditional fermentation of Shanxi aged vinegar. Food Microbiology, 2015, 47:62-68.
    [59] Cizeikiene D, Juodeikiene G, Paskevicius A, Bartkiene E. Antimicrobial activity of lactic acid bacteria against pathogenic and spoilage microorganism isolated from food and their control in wheat bread. Food Control, 2013, 31(2):539-545.
    [60] Arques JL, Rodriguez E, Langa S, Landete JM, Medina M. Antimicrobial activity of lactic acid bacteria in dairy products and gut:effect on pathogens. BioMed Research International, 2015, 2015:584183.
    [61] Patel A, Shah N, Ambalam P, Prajapati JB, Holst O, Ljungh A. Antimicrobial profile of lactic acid bacteria isolated from vegetables and indigenous fermented foods of India against clinical pathogens using microdilution method. Biomedical and Environmental Sciences, 2013, 26(9):759-764.
    [62] Zhang L, Wu C, Ding X, Zheng J, Zhou R. Characterisation of microbial communities in Chinese liquor fermentation starters Daqu using nested PCR-DGGE. World Journal of Microbiology and Biotechnology, 2014, 30(12):3055-3063.
    [63] 张亚丽. 贵州省仁怀地区茅台空气微生物的鉴定与分析. 北京化工大学硕士学位论文, 2014.
    [64] Tao Y, Li J, Rui J, Xu Z, Zhou Y, Hu X, Wang X, Liu M, Li D, Li X. Prokaryotic communities in pit mud from different-aged cellars used for the production of Chinese strong-flavored liquor. Applied and Environmental Microbiology, 2014, 80(7):2254-2260.
    [65] Zhang L, Zhou R, Niu M, Zheng J, Wu C. Difference of microbial community stressed in artificial pit muds for Luzhou-flavour liquor brewing revealed by multiphase culture-independent technology. Journal of Applied Microbiology, 2015, 119(5):1345-1356.
    [66] Hu XL, Du H, Ren C, Xu Y. Illuminating anaerobic microbial community and cooccurrence patterns across a quality gradient in Chinese liquor fermentation pit muds. Applied and Environmental Microbiology, 2016, 82(8):2506-2515.
    [67] Luo Q, Liu C, Wu Z, Wang H, Li W, Zhang K, Huang D, Zhang J, Zhang W. Monitoring of the prokaryotic diversity in pit mud from a Luzhou-flavour liquor distillery and evaluation of two predominant archaea using qPCR assays. Journal of the Institute of Brewing, 2014, 120(3):253-261.
    [68] Porat I, Vishnivetskaya TA, Mosher JJ, Brandt CC, Yang ZK, Brooks SC, Liang L, Drake MM, Podar M, Brown SD, Palumbo AV. Characterization of archaeal community in contaminated and uncontaminated surface stream sediments. Microbial Ecology, 2010, 60(4):784-795.
    [69] Wu C, Ding X, Huang J, Zhou R. Characterization of archaeal community in Luzhou-flavour pit mud. Journal of the Institute of Brewing, 2015, 121(4):597-602.
    [70] Aydin S, Yıldırım E, Ince O, Ince B. Rumen anaerobic fungi create new opportunities for enhanced methane production from microalgae biomass. Algal Research, 2017, 23:150-160.
    [71] Dollhofer V, Podmirseg SM, Callaghan TM, Griffith GW, Fliegerová K. Biogas Science and Technology. Springer International Publishing, 2015:41-61.
    [72] Foo JL, Ling H, Lee YS, Chang MW. Microbiome engineering:current applications and its future. Biotechnology Journal, 2017, 12(3):1600099.
    [73] Wu Q, Ling J, Xu Y. Starter culture selection for making Chinese sesame-flavored liquor based on microbial metabolic activity in mixed-culture fermentation. Applied and Environmental Microbiology, 2014, 80(14):4450-4459.
    [74] Wang HY, Tang J, Xu Y, Liu YC, Yang Q, Wang Z, Yang SZ, Li YQ, Li RL, Guan Y. Analysis of community structure of microbes and functional microbes in fen-flavor xiaoqu liquor. Liquor-Making Science& Technology, 2012, 12:48-52. (in Chinese) 王海燕, 唐洁, 徐岩, 刘源才, 杨强, 王喆, 杨生智, 李燕群, 李锐利, 管莹. 清香型小曲白酒中微生物组成及功能微生物的分析. 酿酒科技, 2012, 12:48-52.
    [75] Xu Y. Study on liquor-making microbes and the regulation & control of their metabolism based on flavor-oriented technology. Liquor-Making Science& Technology, 2015, 2(2):1-16. 徐岩. 基于风味导向技术的中国白酒微生物及其代谢调控研究. 酿酒科技, 2015(2):1-11-16.
    [76] Bing J, Han PJ, Liu WQ, Wang QM, Bai FY. Evidence for a Far East Asian origin of lager beer yeast. Current Biology, 2014, 24(10):R380-381.
    [77] Hittinger CT, Rokas A, Bai FY, Boekhout T, Goncalves P, Jeffries TW, Kominek J, Lachance MA, Libkind D, Rosa CA, Sampaio JP, Kurtzman CP. Genomics and the making of yeast biodiversity. Current Opinion in Genetics & Development, 2015, 35:100-109.
    [78] Yu XW, Wang LL, Xu Y. Rhizopus chinensis lipase:Gene cloning, expression in Pichia pastoris and properties. Journal of Molecular Catalysis B-Enzymatic, 2009, 57(1-4):304-311.
    [79] Lu X, Wu Q, Zhang Y, Xu Y. Genomic and transcriptomic analyses of the Chinese Maotai-flavored liquor yeast MT1 revealed its unique multi-carbon co-utilization. BMC Genomics, 2015, 16:1064.
    [80] Wu Q, Xu Y, Chen L. Diversity of yeast species during fermentative process contributing to Chinese Maotai-flavour liquor making. Letters in Applied Microbiology, 2012, 55(4):301-307.
    [81] Zhi Y, Wu Q, Xu Y. Genome and transcriptome analysis of surfactin biosynthesis in Bacillus amyloliquefaciens MT45. Scientific Reports, 2017, 7:40976.
    [82] Ge J, Sun Y, Xin X, Wang Y, Ping W. Purification and partial characterization of a novel bacteriocin synthesized by Lactobacillus paracasei HD1-7 isolated from Chinese Sauerkraut juice. Scientific Reports, 2016, 6:19366.
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任聪,杜海,徐岩. 中国传统发酵食品微生物组研究进展[J]. 微生物学报, 2017, 57(6): 885-898

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