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基于RNA-seq分析bdhA敲除对枯草芽孢杆菌产纳豆激酶和MK-7的影响
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国家自然科学基金(32372295);安徽省高校杰出青年科研项目(2023AH020013);安徽省大学生创新创业计划(202310363254)


RNA-seq reveals the effects of bdhA knockout on co-production of nattokinase and menaquinone-7 by Bacillus subtilis
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    摘要:

    纳豆激酶(nattokinase, NK)具有多种生理功能,是治疗心血管疾病的理想药物。甲萘醌-7 (menaquinone-7, MK-7)是人体不可缺少的脂溶性维生素之一,可预防骨质疏松和帕金森等疾病。【目的】提高枯草芽孢杆菌中NK和MK-7共同生产的产量,揭示重组菌中共同生产NK和MK-7的机理,为MK-7和NK的生成提供新的代谢工程策略。【方法】以枯草芽孢杆菌为出发菌株,敲除2,3-丁二醇脱氢酶基因(bdhA),构建一株能增加NK和MK-7共同生产的枯草芽孢杆菌(Bacillus subtilis) 168-ΔbdhA。利用RNA-seq分析NK和MK-7合成途径关键酶编码基因的变化,总结NK和MK-7共同生产的机制。【结果】与原始菌株相比,Bacillus subtilis 168-ΔbdhA中2,3-丁二醇含量降低64.0%,为2.76 g/L。NK和MK-7的产量较原始菌株提高30.0%和60.0%。RNA-seq分析表明,中心碳代谢、氧化磷酸化和NK及MK-7合成等过程相关的基因表达存在差异。NK负调控因子codY下调2.19倍。在蛋白质分泌途径中,secA下调0.37倍,tatADtatC分别上调2.81倍和0.50倍。【结论】bdhA的敲除阻断了2,3-丁二醇的碳通量,促进甘油的吸收,碳通量更多地流向NK和MK-7的合成途径。负调控因子codY的下调促进NK转录,蛋白转运相关途径基因的上下调促进MK-7的胞外分泌,从而实现其产量的增加。

    Abstract:

    Nattokinase has a variety of physiological functions and serves the treatment of cardiovascular diseases. Menaquinone-7, one of indispensable fat-soluble vitamins in the human body, can prevent diseases such as osteoporosis and Parkinson’s disease. [Objective] To enhance the co-production of nattokinase and menaquinone-7 by Bacillus subtilis, reveal the co-production mechanism in the recombinant strain, and provide new metabolic engineering strategies for the production of nattokinase and menaquinone-7. [Methods] We constructed B. subtilis 168-ΔbdhA by knocking out the 2,3-butanediol dehydrogenase gene bdhA from B. subtilis 168. RNA-seq was employed to measure the expression changes of key enzyme-coding genes in the nattokinase and menaquinone-7 synthesis pathways. [Results] Compared with B. subtilis 168, the content of 2,3-butanediol in B. subtilis 168-ΔbdhA was 2.76 g/L, which was reduced by 64.0%. The yields of nattokinase and menaquinone-7 were increased by 30.0% and 60.0%, respectively. The expression levels of genes related to central carbon metabolism, oxidative phosphorylation, and the synthesis of nattokinase and menaquinone-7 changed by RNA-seq analysis. The expression level of nattokinase negative regulator gene codY was down-regulated by 2.19-fold in the mutant. The expression of secA, tatAD, and tatC involved in protein secretion showed the down-regulation of 0.37-fold, up-regulation of 2.81-fold, and up-regulation of 0.50-fold, respectively. [Conclusion] The knockout of bdhA blocked the carbon flux of 2,3-butanediol and promoted glycerol uptake, causing more carbon fluxing to the synthesis pathways of nattokinase and menaquinone-7. The down-regulation of the negative regulator codY promoted the transcription of nattokinase. The up- and down-regulation of genes involved in protein scretion promoted extracellular secretion of menaquinone-7.

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黄茜琳,黄俊宝,高旭丽,罗雅妮,陶伟,郭明雨,刘永圆,吴晶,吴超,薛正莲,陈宇,刘艳. 基于RNA-seq分析bdhA敲除对枯草芽孢杆菌产纳豆激酶和MK-7的影响. 微生物学报, 2024, 64(7): 2394-2406

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  • 收稿日期:2023-12-13
  • 最后修改日期:2024-03-18
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  • 在线发布日期: 2024-07-06
  • 出版日期: 2024-07-04