Abstract:Soil nutrient deficiency is a major limiting factor affecting crop yields. Excessive use of chemical fertilizers can lead to soil compaction, environmental pollution, and decreased crop yields and quality. Microalgae-based fertilizer, functioning as a novel green bio-fertilizer, not only effectively promotes crop growth but also enhances soil fertility under various adverse soil conditions.Objectives This study investigated the effects of different fertilizer treatments on the growth of foxtail millet (Setaria italica L.) and the physicochemical properties, enzymes activities, and microbial communities of infertile soil, aiming to provide theoretical support for the application of microalgae-based fertilizer in chemical fertilizer reduction and green sustainable agricultural production.Methods The foxtail millet cultivar ‘Jingu 21’ was cultivated in this study under five fertilizer treatments: full chemical fertilizer (T1), chemical-microalgae integrated fertilizer (T2: 80% chemical fertilizer+20% microalgae-based fertilizer; T3: 60% chemical fertilizer+40% microalgae-based fertilizer; T4: 40% chemical fertilizer+60% microalgae-based fertilizer), and full microalgae-based fertilizer (T5). The growth indexes, biomass, and pigment content of foxtail millet in each treatment were determined, and the physicochemical properties, enzyme activities, and bacterial community characteristics of the infertile soil were measured, after 90 days of cultivation.Results Among the five fertilizer treatments, T4 had the most significant effect of promoting the seedling growth of foxtail millet in the infertile soil. Compared with T1, T4 increased the seedling height, the aboveground dry weight, and the content of chlorophyll a, chlorophyll b, and carotenoids by 26.41%, 126.47%, 17.1%, 24.5%, and 28.0%, respectively. In addition, T5, T2, T3, and T4 increased the content of total nitrogen, available phosphorus, and organic matter and the activities of sucrase, nitrate reductase, peroxidase, and phosphatase in the soil, compared with T1, and T4 had the most significant soil improvement effect. The 16S rRNA gene amplicon sequencing results showed that compared with T1 and T5, T4 increased the diversity of soil microorganisms, in which the relative abundance of Acidobacteriota and Chloroflexi was significantly increased. The correlation analysis showed that the composition of soil microbial diversity was significantly and positively correlated with urease, and the soil microbial community composition had significantly positive correlations with available phosphorus, sucrase, peroxidase, and urease. Redundancy analysis showed that urease and available phosphorus were the main environmental factors affecting the soil bacterial community structure. The relative abundance of Chloroflexi had significantly positive correlations with the urease activity and the available phosphorus content.Conclusion The combined application of microalgae-based fertilizer with reduced chemical fertilizer not only effectively improves the nutrient content and enzyme activities but also enhances the microbial diversity and community structure in the soil, thereby promoting the growth of foxtail millet seedlings in infertile soil.